If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ), 'gf_id' => 'HOM05D000652', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000652' ), 'data_identifier' => 'HOM05D000652', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000652', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34020' => 'bna', 'A03p22640' => 'bna', 'A04p03530' => 'bna', 'A04p29960' => 'bna', 'A04p31370' => 'bna', 'A05p02040' => 'bna', 'A06p42580' => 'bna', 'A07p31790' => 'bna', 'A07p35180' => 'bna', 'Aa31LG10G11640' => 'aar', 'Aa31LG2G6600' => 'aar', 'Aa31LG3G950' => 'aar', 'Aa31LG5G19370' => 'aar', 'Aa31LG6G15030' => 'aar', 'Aa31LG8G10160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1430' => 'aag', 'Actinidia00671' => 'ach', 'Actinidia00959' => 'ach', 'Actinidia07635' => 'ach', 'Actinidia10380' => 'ach', 'Actinidia10972' => 'ach', 'Actinidia11134' => 'ach', 'Actinidia13678' => 'ach', 'Actinidia14346' => 'ach', 'Actinidia14848' => 'ach', 'Actinidia16614' => 'ach', 'Actinidia16799' => 'ach', 'Actinidia28176' => 'ach', 'Actinidia28828' => 'ach', 'Actinidia29708' => 'ach', 'Actinidia30846' => 'ach', 'Actinidia33915' => 'ach', 'Actinidia35574' => 'ach', 'Actinidia38397' => 'ach', 'Actinidia39501' => 'ach', 'Ah.03g140110' => 'amhyb', 'Ah.04g150880' => 'amhyb', 'Ah.09g233630' => 'amhyb', 'Ah.10g036640' => 'amhyb', 'AL108U10010' => 'aly', 'AL2G27770' => 'aly', 'AL4G37930' => 'aly', 'AL4G39100' => 'aly', 'AL5G14250' => 'aly', 'AL5G38140' => 'aly', 'AL7G12550' => 'aly', 'Aqoxy1G03167' => 'aox', 'Aqoxy2G00443' => 'aox', 'Aqoxy3G03904' => 'aox', 'Aqoxy4G02466' => 'aox', 'Aqoxy5G01308' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01XFNB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0ZB9Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LLY9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q6Y7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61RTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.752ZX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TY7IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FT653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X298I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A63MFX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9KSLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5BLPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F457JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6EXEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H39FBL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHTC2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRLI9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN4MV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QSZJ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C9TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SKF7WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T023HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD9ADE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3BCW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5V5B3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0QIY9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW4HGU' => 'arhy', 'AT1G68810' => 'ath', 'AT2G40200' => 'ath', 'AT2G41130' => 'ath', 'AT3G25710' => 'ath', 'AT3G56770' => 'ath', 'AT4G38070' => 'ath', 'ATR0307G018' => 'atr', 'ATR0564G178' => 'atr', 'ATR0564G310' => 'atr', 'ATR0602G068' => 'atr', 'ATR0665G609' => 'atr', 'ATR0681G141' => 'atr', 'Atru.chr1.1403' => 'acertr', 'Atru.chr10.1678_Atru.chr10.1679' => 'acertr', 'Atru.chr11.1360' => 'acertr', 'Atru.chr12.93' => 'acertr', 'Atru.chr13.1022' => 'acertr', 'Atru.chr3.1262' => 'acertr', 'Atru.chr3.1263' => 'acertr', 'Atru.chr3.1271' => 'acertr', 'Atru.chr6.2808' => 'acertr', 'AUR62002923' => 'cqu', 'AUR62003654' => 'cqu', 'AUR62017962' => 'cqu', 'AUR62018364' => 'cqu', 'AUR62022910' => 'cqu', 'AUR62030298' => 'cqu', 'AUR62031178' => 'cqu', 'AUR62035285' => 'cqu', 'AUR62036594' => 'cqu', 'AUR62036595' => 'cqu', 'BcaB01g03490' => 'bca', 'BcaB01g03554' => 'bca', 'BcaB02g08348' => 'bca', 'BcaB03g12307' => 'bca', 'BcaB03g15448' => 'bca', 'BcaB03g15851' => 'bca', 'BcaB03g15852' => 'bca', 'BcaB05g24415' => 'bca', 'BcaB07g30256' => 'bca', 'BcaC01g00348' => 'bca', 'BcaC01g05363' => 'bca', 'BcaC01g05420' => 'bca', 'BcaC02g07365' => 'bca', 'BcaC02g09870' => 'bca', 'BcaC02g12753' => 'bca', 'BcaC02g12849' => 'bca', 'BcaC02g12851' => 'bca', 'BcaC03g17287' => 'bca', 'BcaC06g31122' => 'bca', 'BcaC06g33966' => 'bca', 'BcaC08g45934' => 'bca', 'BcaC08g46331' => 'bca', 'BcaNung05627' => 'bca', 'BolC2t08605H' => 'bol', 'BolC2t11316H' => 'bol', 'BolC3t15066H' => 'bol', 'BolC3t15124H' => 'bol', 'BolC4t21888H' => 'bol', 'BolC4t25230H' => 'bol', 'BolC4t28292H' => 'bol', 'BolC4t28383H' => 'bol', 'BolC6t38834H' => 'bol', 'BolC6t39321H' => 'bol', 'BolC7t43989H' => 'bol', 'BraA02t08423Z' => 'bra', 'BraA03t11488Z' => 'bra', 'BraA04t16082Z' => 'bra', 'BraA04t18512Z' => 'bra', 'BraA04t18595Z' => 'bra', 'BraA05t19200Z' => 'bra', 'BraA06t27173Z' => 'bra', 'BraA07t30806Z' => 'bra', 'BraA07t31110Z' => 'bra', 'C02p25330' => 'bna', 'C02p52330' => 'bna', 'C03p26810' => 'bna', 'C03p27470' => 'bna', 'C04p02430' => 'bna', 'C04p35720' => 'bna', 'C04p67870' => 'bna', 'C04p68780' => 'bna', 'C06p37320' => 'bna', 'C06p41080' => 'bna', 'C07p34570' => 'bna', 'CAN.G156.9' => 'can', 'CAN.G184.87' => 'can', 'CAN.G370.66' => 'can', 'CAN.G456.24' => 'can', 'CAN.G475.37' => 'can', 'CAN.G525.30' => 'can', 'CAN.G960.65' => 'can', 'CANSAT01G0253' => 'cansat', 'CANSAT25G3061' => 'cansat', 'CANSAT35G1387' => 'cansat', 'CANSAT56G4511' => 'cansat', 'CANSAT64G0176' => 'cansat', 'CANSAT64G1177' => 'cansat', 'CANSAT64G1682' => 'cansat', 'CARHR061640' => 'chi', 'CARHR135240' => 'chi', 'CARHR136220' => 'chi', 'CARHR146640' => 'chi', 'CARHR159450' => 'chi', 'CARHR166930' => 'chi', 'Carub.0002s1539' => 'cru', 'Carub.0004s2242' => 'cru', 'Carub.0004s2344' => 'cru', 'Carub.0005s0353' => 'cru', 'Carub.0005s2351' => 'cru', 'Carub.0007s0214' => 'cru', 'Ca_00430_v3' => 'car', 'Ca_01460_v3' => 'car', 'Ca_04532_v3' => 'car', 'Ca_05083_v3' => 'car', 'Ca_05430_v3' => 'car', 'Ca_08378_v3' => 'car', 'Ca_10519_v3' => 'car', 'Ca_15136_v3' => 'car', 'Ca_27356_v3' => 'car', 'CBR_g37532' => 'cbr', 'Cc02_g06200' => 'ccan', 'Cc02_g14830' => 'ccan', 'Cc05_g08220' => 'ccan', 'Cc06_g19810' => 'ccan', 'Cc06_g19820' => 'ccan', 'Cc07_g14210' => 'ccan', 'Cc11_g10650' => 'ccan', 'CDE02G0264' => 'cde', 'CDE04G1468' => 'cde', 'CDE05G2543' => 'cde', 'CDE05G3690' => 'cde', 'CDE06G0060' => 'cde', 'CDE06G2047' => 'cde', 'CDE08G0184' => 'cde', 'CDE10G0113' => 'cde', 'CDE10G0329' => 'cde', 'CDE10G0396' => 'cde', 'Cfa013684' => 'cfa', 'Cfa018633' => 'cfa', 'Cfa019992' => 'cfa', 'Ciclev10002205m.g' => 'ccl', 'Ciclev10012626m.g' => 'ccl', 'Ciclev10016261m.g' => 'ccl', 'Ciclev10016289m.g' => 'ccl', 'Ciclev10018233m.g' => 'ccl', 'Ciclev10027092m.g' => 'ccl', 'Ciclev10031900m.g' => 'ccl', 'Ciclev10032356m.g' => 'ccl', 'CiPaw.01G045900' => 'cil', 'CiPaw.01G300400' => 'cil', 'CiPaw.02G020800' => 'cil', 'CiPaw.02G193800' => 'cil', 'CiPaw.07G166300' => 'cil', 'CiPaw.08G055200' => 'cil', 'CiPaw.09G049100' => 'cil', 'CiPaw.09G069300' => 'cil', 'CiPaw.10G041200' => 'cil', 'CiPaw.10G058300' => 'cil', 'CiPaw.15G003100' => 'cil', 'CiPaw.16G002900' => 'cil', 'ClCG01G018410' => 'cla', 'ClCG02G017920' => 'cla', 'ClCG03G007780' => 'cla', 'ClCG05G023040' => 'cla', 'ClCG06G009690' => 'cla', 'ClCG08G011700' => 'cla', 'ClCG10G013680' => 'cla', 'ClCG11G006060' => 'cla', 'COL.COLO4_07864' => 'col', 'COL.COLO4_24029' => 'col', 'COL.COLO4_24742' => 'col', 'COL.COLO4_27346' => 'col', 'COL.COLO4_31311' => 'col', 'COL.COLO4_33563' => 'col', 'COL.COLO4_35231' => 'col', 'Cpa.g.sc19.156' => 'cpa', 'Cpa.g.sc21.7' => 'cpa', 'Cpa.g.sc53.118' => 'cpa', 'Cpa.g.sc55.51' => 'cpa', 'Cpa.g.sc7.53' => 'cpa', 'Cpa.g.sc92.83' => 'cpa', 'CsaV3_1G033410' => 'csa', 'CsaV3_2G030310' => 'csa', 'CsaV3_3G042970' => 'csa', 'CsaV3_5G033960' => 'csa', 'CsaV3_6G001900' => 'csa', 'CsaV3_6G018830' => 'csa', 'CsaV3_6G045070' => 'csa', 'CSS0003757' => 'camsi', 'CSS0005453' => 'camsi', 'CSS0005697' => 'camsi', 'CSS0006854' => 'camsi', 'CSS0008101' => 'camsi', 'CSS0022994' => 'camsi', 'CSS0025568' => 'camsi', 'CSS0027737' => 'camsi', 'CSS0031313' => 'camsi', 'CSS0037900' => 'camsi', 'CSS0038419' => 'camsi', 'CSS0042214' => 'camsi', 'CSS0049426' => 'camsi', 'DCAR_007224' => 'dca', 'DCAR_010463' => 'dca', 'DCAR_013646' => 'dca', 'DCAR_014190' => 'dca', 'DCAR_021286' => 'dca', 'DCAR_028008' => 'dca', 'DCAR_030086' => 'dca', 'Dinv00217' => 'din', 'Dinv01624' => 'din', 'Dinv03199' => 'din', 'Dinv04611' => 'din', 'Dinv05801' => 'din', 'Dinv08788' => 'din', 'Dinv10603' => 'din', 'Dinv13611' => 'din', 'Dinv15455' => 'din', 'Dinv16509' => 'din', 'Dinv16755' => 'din', 'Dinv16756' => 'din', 'Dinv21469' => 'din', 'Dinv40667' => 'din', 'Dinv42621' => 'din', 'Dinv44853' => 'din', 'Duzib041G0782' => 'dzi', 'Duzib093G0883' => 'dzi', 'Duzib106G0559' => 'dzi', 'Duzib114G0203' => 'dzi', 'Duzib116G0029' => 'dzi', 'Duzib128G0925' => 'dzi', 'Duzib147G0151' => 'dzi', 'Duzib147G1119' => 'dzi', 'Duzib160G0173' => 'dzi', 'Duzib192G0852' => 'dzi', 'Duzib235G1540' => 'dzi', 'Duzib251G0872' => 'dzi', 'Duzib268G1180' => 'dzi', 'ECA232G4297' => 'eca', 'ECA233G3032' => 'eca', 'ECA234G0591' => 'eca', 'ECA234G1998' => 'eca', 'ECA238G4376' => 'eca', 'ECA247G0019' => 'eca', 'ECA248G2834' => 'eca', 'EL10Ac2g04857' => 'bvu', 'EL10Ac3g07254' => 'bvu', 'EL10Ac6g14503' => 'bvu', 'EL10Ac6g15217' => 'bvu', 'EL10Ac8g20513' => 'bvu', 'Eucgr.A02230' => 'egr', 'Eucgr.D00509' => 'egr', 'Eucgr.E02743' => 'egr', 'Eucgr.F02138' => 'egr', 'Eucgr.G02351' => 'egr', 'Eucgr.J00190' => 'egr', 'Eucgr.K01103' => 'egr', 'FAN01G2485' => 'fan', 'FAN03G1974' => 'fan', 'FAN04G0862' => 'fan', 'FAN06G3349' => 'fan', 'FAN07G2559' => 'fan', 'FAN08G0005' => 'fan', 'FAN10G2764' => 'fan', 'FAN11G2301' => 'fan', 'FAN11G3358' => 'fan', 'FAN12G3331' => 'fan', 'FAN13G1186' => 'fan', 'FAN16G0909' => 'fan', 'FAN16G1420' => 'fan', 'FAN17G2813' => 'fan', 'FAN18G4194' => 'fan', 'FAN19G0853' => 'fan', 'FAN21G0348' => 'fan', 'FAN21G2954' => 'fan', 'FAN22G2252' => 'fan', 'FAN23G2935' => 'fan', 'FAN25G0641' => 'fan', 'FAN25G3371' => 'fan', 'FAN26G1879' => 'fan', 'FvH4_1g19780' => 'fve', 'FvH4_3g07920' => 'fve', 'FvH4_3g28400' => 'fve', 'FvH4_4g28130' => 'fve', 'FvH4_5g35460' => 'fve', 'FvH4_7g24720' => 'fve', 'Glyma.01G023833' => 'gma', 'Glyma.01G088300' => 'gma', 'Glyma.02G041000' => 'gma', 'Glyma.02G100700' => 'gma', 'Glyma.02G139700' => 'gma', 'Glyma.02G164116' => 'gma', 'Glyma.02G213800' => 'gma', 'Glyma.02G258300' => 'gma', 'Glyma.03G126100' => 'gma', 'Glyma.06G283300' => 'gma', 'Glyma.07G205800' => 'gma', 'Glyma.10G205000' => 'gma', 'Glyma.11G231300' => 'gma', 'Glyma.12G122800' => 'gma', 'Glyma.12G209900' => 'gma', 'Glyma.13G291400' => 'gma', 'Glyma.14G058200' => 'gma', 'Glyma.14G181500' => 'gma', 'Glyma.18G025800' => 'gma', 'Glyma.19G128900' => 'gma', 'Glyma.20G185500' => 'gma', 'Gohir.A04G081400' => 'ghi', 'Gohir.A05G155700' => 'ghi', 'Gohir.A05G220000' => 'ghi', 'Gohir.A05G330901' => 'ghi', 'Gohir.A07G185700' => 'ghi', 'Gohir.A08G221620' => 'ghi', 'Gohir.A10G031500' => 'ghi', 'Gohir.A10G239700' => 'ghi', 'Gohir.A11G050700' => 'ghi', 'Gohir.A11G306700' => 'ghi', 'Gohir.A12G170800' => 'ghi', 'Gohir.A13G052800' => 'ghi', 'Gohir.D04G069500' => 'ghi', 'Gohir.D05G158400' => 'ghi', 'Gohir.D05G222600' => 'ghi', 'Gohir.D10G032300' => 'ghi', 'Gohir.D10G251600' => 'ghi', 'Gohir.D11G054000' => 'ghi', 'Gohir.D11G322200' => 'ghi', 'Gohir.D12G174000' => 'ghi', 'Gohir.D13G069400' => 'ghi', 'Gorai.007G059100' => 'gra', 'Gorai.007G352300' => 'gra', 'Gorai.008G186700' => 'gra', 'Gorai.009G163400' => 'gra', 'Gorai.009G230000' => 'gra', 'Gorai.011G034000' => 'gra', 'Gorai.011G292100' => 'gra', 'Gorai.012G078100' => 'gra', 'Gorai.013G079600' => 'gra', 'GSVIVG01009166001' => 'vvi', 'GSVIVG01011960001' => 'vvi', 'GSVIVG01020688001' => 'vvi', 'GSVIVG01025747001' => 'vvi', 'GSVIVG01032789001' => 'vvi', 'HanXRQChr01g0008511' => 'han', 'HanXRQChr04g0111431' => 'han', 'HanXRQChr08g0214401' => 'han', 'HanXRQChr09g0251771' => 'han', 'HanXRQChr12g0364831' => 'han', 'HanXRQChr13g0396571' => 'han', 'HanXRQChr14g0442671' => 'han', 'HanXRQChr15g0495881' => 'han', 'HanXRQChr16g0518881' => 'han', 'HanXRQChr16g0528911' => 'han', 'HanXRQChr17g0552271' => 'han', 'HanXRQChr17g0556771' => 'han', 'HanXRQChr17g0568271' => 'han', 'Haze_06242' => 'cav', 'Haze_15058' => 'cav', 'Haze_17245' => 'cav', 'Haze_17436' => 'cav', 'Haze_20243' => 'cav', 'Hma1.2p1_0119F.1_g056720' => 'hma', 'Hma1.2p1_0178F.1_g078960' => 'hma', 'Hma1.2p1_0277F.1_g111720' => 'hma', 'Hma1.2p1_0406F.1_g146010' => 'hma', 'Hma1.2p1_0437F.1_g152940' => 'hma', 'Hma1.2p1_0523F.1_g172150' => 'hma', 'Hma1.2p1_0705F.1_g206890' => 'hma', 'Hma1.2p1_0987F.1_g244530' => 'hma', 'HPP92_002842' => 'vpl', 'HPP92_004127' => 'vpl', 'HPP92_004240' => 'vpl', 'HPP92_004262' => 'vpl', 'HPP92_015417' => 'vpl', 'HPP92_016289' => 'vpl', 'HPP92_016290' => 'vpl', 'HPP92_016308' => 'vpl', 'HPP92_016309' => 'vpl', 'HPP92_022827' => 'vpl', 'HPP92_026979' => 'vpl', 'HPP92_027192' => 'vpl', 'HPP92_027193' => 'vpl', 'Hund05769' => 'sun', 'Hund13880' => 'sun', 'Hund14092' => 'sun', 'Hund16538' => 'sun', 'Hund24577' => 'sun', 'Hund25105' => 'sun', 'Lalb_Chr02g0151781' => 'lal', 'Lalb_Chr02g0160101' => 'lal', 'Lalb_Chr04g0250501' => 'lal', 'Lalb_Chr04g0252861' => 'lal', 'Lalb_Chr04g0255001' => 'lal', 'Lalb_Chr05g0216441' => 'lal', 'Lalb_Chr06g0170251' => 'lal', 'Lalb_Chr08g0231631' => 'lal', 'Lalb_Chr09g0328021' => 'lal', 'Lalb_Chr10g0099691' => 'lal', 'Lalb_Chr10g0102731' => 'lal', 'Lalb_Chr14g0365711' => 'lal', 'Lalb_Chr16g0381691' => 'lal', 'Lalb_Chr16g0384321' => 'lal', 'Lalb_Chr18g0059121' => 'lal', 'Lalb_Chr19g0134911' => 'lal', 'Lalb_Chr22g0357561' => 'lal', 'Lalb_Chr24g0400081' => 'lal', 'Lj1A1089T59' => 'lonja', 'Lj1A1193G77' => 'lonja', 'Lj1C958T8' => 'lonja', 'Lj1C958T9' => 'lonja', 'Lj1g0021883' => 'lja', 'Lj1g0026648' => 'lja', 'Lj2A535T44' => 'lonja', 'Lj2g0000183' => 'lja', 'Lj2g0012973' => 'lja', 'Lj3A1020G57' => 'lonja', 'Lj3g0000241' => 'lja', 'Lj3g0024017' => 'lja', 'Lj4g0008108' => 'lja', 'Lj5g0001067' => 'lja', 'Lj6A766T35' => 'lonja', 'Lj6g0002961' => 'lja', 'Lj8A103T85' => 'lonja', 'LjContig00357g0025242' => 'lja', 'LjContig00408g0004593' => 'lja', 'Lsat_1_v5_gn_1_1761' => 'lsa', 'Lsat_1_v5_gn_2_70840' => 'lsa', 'Lsat_1_v5_gn_3_58041' => 'lsa', 'Lsat_1_v5_gn_4_19561' => 'lsa', 'Lsat_1_v5_gn_4_49501' => 'lsa', 'Lsat_1_v5_gn_4_61220' => 'lsa', 'Lsat_1_v5_gn_5_155841' => 'lsa', 'Lsat_1_v5_gn_8_138940' => 'lsa', 'Lsat_1_v5_gn_9_62260' => 'lsa', 'Manes.02G145400' => 'mes', 'Manes.06G072600' => 'mes', 'Manes.07G131700' => 'mes', 'Manes.08G061000' => 'mes', 'Manes.12G127100' => 'mes', 'Manes.14G097100' => 'mes', 'Manes.16G038200' => 'mes', 'Manes.17G055000' => 'mes', 'Manes.18G059400' => 'mes', 'Mapoly0039s0068' => 'mpo', 'MBI02_g32606_MAGBIO' => 'mbi', 'MBI06_g07365_MAGBIO' => 'mbi', 'MBI06_g25994_MAGBIO' => 'mbi', 'MBI07_g33319_MAGBIO' => 'mbi', 'MBI12_g24826_MAGBIO' => 'mbi', 'MBI15_g31579_MAGBIO' => 'mbi', 'MBI19_g19206_MAGBIO' => 'mbi', 'MBI19_g33684_MAGBIO' => 'mbi', 'MBI19_g33685_MAGBIO' => 'mbi', 'MD01G1155000' => 'mdo', 'MD05G1302400' => 'mdo', 'MD07G1224100' => 'mdo', 'MD10G1281100' => 'mdo', 'MD12G1095300' => 'mdo', 'MD13G1047100' => 'mdo', 'MD14G1091000' => 'mdo', 'MD15G1314000' => 'mdo', 'MD15G1384300' => 'mdo', 'MD16G1048700' => 'mdo', 'Medtr1g093750' => 'mtr', 'Medtr2g015890' => 'mtr', 'Medtr2g091190' => 'mtr', 'Medtr3g070970' => 'mtr', 'Medtr4g079760' => 'mtr', 'Medtr4g087920' => 'mtr', 'Medtr5g032375' => 'mtr', 'Medtr5g066080' => 'mtr', 'Medtr7g089400' => 'mtr', 'Medtr8g032210' => 'mtr', 'MELO3C002644.2' => 'cme', 'MELO3C007720.2' => 'cme', 'MELO3C008307.2' => 'cme', 'MELO3C011094.2' => 'cme', 'MELO3C012213.2' => 'cme', 'MELO3C019758.2' => 'cme', 'MELO3C020417.2' => 'cme', 'MELO3C026599.2' => 'cme', 'Migut.E00296' => 'egut', 'Migut.F00663' => 'egut', 'Migut.H01448' => 'egut', 'Migut.H02300' => 'egut', 'Migut.J01640' => 'egut', 'Migut.M00256' => 'egut', 'MSTRG.13218' => 'ama', 'MSTRG.13502' => 'ama', 'MSTRG.14727' => 'ama', 'MSTRG.15692' => 'ama', 'MSTRG.19792' => 'ama', 'MSTRG.27320' => 'ama', 'MSTRG.7401' => 'ama', 'MSTRG.7692' => 'ama', 'MSTRG.816' => 'ama', 'MSTRG.8939' => 'ama', 'Nitab4.5_0000062g0060' => 'nta', 'Nitab4.5_0000131g0320' => 'nta', 'Nitab4.5_0000414g0040' => 'nta', 'Nitab4.5_0000797g0040' => 'nta', 'Nitab4.5_0000812g0040' => 'nta', 'Nitab4.5_0000902g0280' => 'nta', 'Nitab4.5_0001122g0030' => 'nta', 'Nitab4.5_0001180g0080' => 'nta', 'Nitab4.5_0002447g0010' => 'nta', 'Nitab4.5_0002810g0030' => 'nta', 'Nitab4.5_0003709g0060' => 'nta', 'Nitab4.5_0003827g0040' => 'nta', 'Nitab4.5_0004122g0010' => 'nta', 'Nitab4.5_0004838g0010' => 'nta', 'Nitab4.5_0005703g0010' => 'nta', 'Nitab4.5_0006531g0020' => 'nta', 'Nitab4.5_0009762g0040' => 'nta', 'Nitab4.5_0010797g0030' => 'nta', 'Nn1g04389' => 'nnu', 'Nn1g05551' => 'nnu', 'Nn1g09081' => 'nnu', 'Nn2g10913' => 'nnu', 'Nn2g13182' => 'nnu', 'Nn3g17709' => 'nnu', 'Nn4g23719' => 'nnu', 'Nn4g24504' => 'nnu', 'Nn5g29900' => 'nnu', 'Nn6g31866' => 'nnu', 'Nn7g36844' => 'nnu', 'Oeu004683.2' => 'oeu', 'Oeu005206.1' => 'oeu', 'Oeu010321.1' => 'oeu', 'Oeu024090.1' => 'oeu', 'Oeu034957.1' => 'oeu', 'Oeu044631.2' => 'oeu', 'Oeu046540.1' => 'oeu', 'Oeu058417.2' => 'oeu', 'Oeu058984.1' => 'oeu', 'Oeu062346.1' => 'oeu', 'Os01g0159800' => 'osa', 'Os01g0218100' => 'osa', 'Os03g0260600' => 'osa', 'Os03g0811400' => 'osa', 'Os05g0163900' => 'osa', 'Os08g0432800' => 'osa', 'Os08g0477900' => 'osa', 'Os09g0410700' => 'osa', 'Os09g0463900' => 'osa', 'Peaxi162Scf00003g04929' => 'pax', 'Peaxi162Scf00196g00118' => 'pax', 'Peaxi162Scf00284g00719' => 'pax', 'Peaxi162Scf00380g00016' => 'pax', 'Peaxi162Scf00469g00141' => 'pax', 'Peaxi162Scf00484g00018' => 'pax', 'Peaxi162Scf00735g00516' => 'pax', 'Peaxi162Scf00979g00024' => 'pax', 'PGR031G0780' => 'pgr', 'PGR031G3395' => 'pgr', 'PGR042G1431' => 'pgr', 'PGR119G0675' => 'pgr', 'PGR142G1563' => 'pgr', 'PGSC0003DMG400000824' => 'stu', 'PGSC0003DMG400007457' => 'stu', 'PGSC0003DMG400008378' => 'stu', 'PGSC0003DMG400009347' => 'stu', 'PGSC0003DMG400010208' => 'stu', 'PGSC0003DMG400015659' => 'stu', 'PGSC0003DMG400020427' => 'stu', 'PGSC0003DMG400023577' => 'stu', 'PGSC0003DMG400027725' => 'stu', 'Phvul.001G121200' => 'pvu', 'Phvul.001G244500' => 'pvu', 'Phvul.002G148000' => 'pvu', 'Phvul.003G026800' => 'pvu', 'Phvul.003G058800' => 'pvu', 'Phvul.007G101900' => 'pvu', 'Phvul.007G243000' => 'pvu', 'Phvul.008G181500' => 'pvu', 'Phvul.008G222700' => 'pvu', 'Phvul.011G134300' => 'pvu', 'Potri.002G105300' => 'ptr', 'Potri.004G055700' => 'ptr', 'Potri.006G037100' => 'ptr', 'Potri.007G010500' => 'ptr', 'Potri.008G070800' => 'ptr', 'Potri.008G116000' => 'ptr', 'Potri.010G130000' => 'ptr', 'Potri.010G186700' => 'ptr', 'Potri.011G065500' => 'ptr', 'Potri.013G117600' => 'ptr', 'Potri.016G035400' => 'ptr', 'Potri.019G089000' => 'ptr', 'Prupe.1G304900' => 'ppe', 'Prupe.1G530800' => 'ppe', 'Prupe.2G252600' => 'ppe', 'Prupe.4G060000' => 'ppe', 'Prupe.6G198500' => 'ppe', 'Prupe.7G031500' => 'ppe', 'Psat1g198840' => 'psa', 'Psat2g066040' => 'psa', 'Psat2g081440' => 'psa', 'Psat3g080040' => 'psa', 'Psat5g129480' => 'psa', 'Psat5g275240' => 'psa', 'Psat6g179320' => 'psa', 'Psat7g119040' => 'psa', 'Psat7g166360' => 'psa', 'PSO017G6155' => 'pso', 'PSO170G0399' => 'pso', 'PSO339G1046' => 'pso', 'PSO339G4476' => 'pso', 'PSO384G3749' => 'pso', 'PSO384G4152' => 'pso', 'PSO407G0059' => 'pso', 'PSO541G0265' => 'pso', 'PSO541G1923' => 'pso', 'PSO591G0188' => 'pso', 'PSO675G1694' => 'pso', 'PSO675G5090' => 'pso', 'PSO832G0821' => 'pso', 'QL01p001057' => 'qlo', 'QL05p046581' => 'qlo', 'QL06p047256' => 'qlo', 'QL07p011490' => 'qlo', 'QL08p041439' => 'qlo', 'QL08p063410' => 'qlo', 'QL09p017616' => 'qlo', 'QL93p1865_0051' => 'qlo', 'RcHm_v2.0_Chr1g0370561' => 'rch', 'RcHm_v2.0_Chr2g0111351' => 'rch', 'RcHm_v2.0_Chr4g0435901' => 'rch', 'RcHm_v2.0_Chr5g0010631' => 'rch', 'RcHm_v2.0_Chr5g0053301' => 'rch', 'RcHm_v2.0_Chr7g0236841' => 'rch', 'Rhsim03G0145200' => 'rsi', 'Rhsim06G0072300' => 'rsi', 'Rhsim06G0132800' => 'rsi', 'Rhsim08G0016100' => 'rsi', 'Rhsim09G0112800' => 'rsi', 'Rhsim12G0081200' => 'rsi', 'Rhsim13G0190900' => 'rsi', 'Sabra02G0082600' => 'sbr', 'Sabra04G0036400' => 'sbr', 'Sabra06G0025200' => 'sbr', 'Sabra08G0052100' => 'sbr', 'Sabra08G0087900' => 'sbr', 'Sabra10G0099200' => 'sbr', 'Sabra10G0143900' => 'sbr', 'Sabra11G0047300' => 'sbr', 'Sabra13G0099600' => 'sbr', 'Sabra16G0037700' => 'sbr', 'Sabra19G0099500' => 'sbr', 'Sabra19G0099700' => 'sbr', 'Sabra19G0103200' => 'sbr', 'SalBow3G2722' => 'sbo', 'SalBow3G3937' => 'sbo', 'SalBow6G1690' => 'sbo', 'SalBow6G3120' => 'sbo', 'SalBow7G4820' => 'sbo', 'SalBow8G3594' => 'sbo', 'Sc03g0000290' => 'sci', 'Sc04g0006750' => 'sci', 'Sc10g0002480' => 'sci', 'Sc13g0001040' => 'sci', 'Sc21g0003690' => 'sci', 'Sed0001240' => 'sed', 'Sed0002227' => 'sed', 'Sed0004972' => 'sed', 'Sed0005250' => 'sed', 'Sed0006546' => 'sed', 'Sed0009280' => 'sed', 'Sed0010186' => 'sed', 'Sed0010464' => 'sed', 'Sed0011134' => 'sed', 'Sed0013926' => 'sed', 'Sed0018767' => 'sed', 'Sed0020657' => 'sed', 'SEGI_08712' => 'sgi', 'SEGI_12414' => 'sgi', 'SEGI_21409' => 'sgi', 'SEGI_30287' => 'sgi', 'SEGI_32346' => 'sgi', 'SEGI_35657' => 'sgi', 'SGA_v2.0_scaffold115G32136' => 'sas', 'SGA_v2.0_scaffold14G06819' => 'sas', 'SGA_v2.0_scaffold16G07890' => 'sas', 'SGA_v2.0_scaffold195G40851' => 'sas', 'SGA_v2.0_scaffold44G16676' => 'sas', 'SGA_v2.0_scaffold60G20980' => 'sas', 'SGA_v2.0_scaffold97G29129' => 'sas', 'SMO137G0186' => 'smo', 'SMO165G0062' => 'smo', 'Solyc02g076920.3' => 'sly', 'Solyc03g095980.3' => 'sly', 'Solyc04g014360.3' => 'sly', 'Solyc04g076240.3' => 'sly', 'Solyc05g009880.3' => 'sly', 'Solyc06g051260.4' => 'sly', 'Solyc07g053290.3' => 'sly', 'Solyc10g078380.2' => 'sly', 'Sopen00g013410' => 'spe', 'Sopen02g021850' => 'spe', 'Sopen03g026080' => 'spe', 'Sopen04g002080' => 'spe', 'Sopen04g006480' => 'spe', 'Sopen05g005680' => 'spe', 'Sopen06g017200' => 'spe', 'Sopen07g027250' => 'spe', 'Sopen10g029040' => 'spe', 'Sp2g14970' => 'spa', 'Sp4g20590' => 'spa', 'Sp4g22550' => 'spa', 'Sp4g23440' => 'spa', 'Sp5g05800' => 'spa', 'Sp5g23920' => 'spa', 'TAR369G0583' => 'tar', 'TAR371G0987' => 'tar', 'TAR381G1052' => 'tar', 'TAR623G1096' => 'tar', 'TAR623G1743' => 'tar', 'TAR627G0737' => 'tar', 'TAR628G0710' => 'tar', 'TAR629G2154' => 'tar', 'TAR629G2668' => 'tar', 'TAR633G1715' => 'tar', 'THA.LOC104801758' => 'tha', 'THA.LOC104805243' => 'tha', 'THA.LOC104810112' => 'tha', 'THA.LOC104815656' => 'tha', 'THA.LOC104821964' => 'tha', 'THA.LOC104824393' => 'tha', 'THA.LOC104824910' => 'tha', 'THA.LOC104825715' => 'tha', 'Thecc.01G091800' => 'tca', 'Thecc.01G148900' => 'tca', 'Thecc.02G361700' => 'tca', 'Thecc.05G126100' => 'tca', 'Thecc.06G171900' => 'tca', 'Thecc.08G069900' => 'tca', 'Thecc.10G013800' => 'tca', 'Thhalv10004524m.g' => 'esa', 'Thhalv10006410m.g' => 'esa', 'Thhalv10017126m.g' => 'esa', 'Thhalv10017546m.g' => 'esa', 'Thhalv10017944m.g' => 'esa', 'Thhalv10018758m.g' => 'esa', 'Thhalv10027500m.g' => 'esa', 'TPR.G11209' => 'tpr', 'TPR.G11549' => 'tpr', 'TPR.G11700' => 'tpr', 'TPR.G16079' => 'tpr', 'TPR.G22933' => 'tpr', 'TPR.G23528' => 'tpr', 'TPR.G29981' => 'tpr', 'TPR.G40240' => 'tpr', 'TWI09G0969' => 'twi', 'TWI31G0557' => 'twi', 'TWI32G0715' => 'twi', 'TWI38G1347' => 'twi', 'TWI53G1384' => 'twi', 'TWI56G0953' => 'twi', 'TWI63G0417' => 'twi', 'TWI73G0855' => 'twi', 'TWI75G1777' => 'twi', 'TWI79G1418' => 'twi', 'unitig_0.g1719' => 'ugi', 'unitig_21.g20212' => 'ugi', 'unitig_26.g10270' => 'ugi', 'unitig_32.g11803' => 'ugi', 'unitig_748.g7039' => 'ugi', 'unitig_748.g7241' => 'ugi', 'unitig_899.g15329' => 'ugi', 'vmacro01363' => 'vma', 'vmacro03930' => 'vma', 'vmacro06957' => 'vma', 'vmacro10525' => 'vma', 'vmacro12369' => 'vma', 'vmacro18561' => 'vma', 'VMungo0251G0627' => 'vmu', 'VMungo0647G2291' => 'vmu', 'VMungo0647G2293' => 'vmu', 'VMungo0720G1554' => 'vmu', 'VMungo0720G3033' => 'vmu', 'VMungo1127G1303' => 'vmu', 'VMungo1215G1474' => 'vmu', 'VMungo1215G1897' => 'vmu', 'VMungo1383G0151' => 'vmu', 'VMungo1383G1509' => 'vmu', 'Zm00001eb011370' => 'zma', 'Zm00001eb038320' => 'zma', 'Zm00001eb041610' => 'zma', 'Zm00001eb062130' => 'zma', 'Zm00001eb099390' => 'zma', 'Zm00001eb101040' => 'zma', 'Zm00001eb119900' => 'zma', 'Zm00001eb123570' => 'zma', 'Zm00001eb179590' => 'zma', 'Zm00001eb282210' => 'zma', 'Zm00001eb315330' => 'zma', 'Zm00001eb398190' => 'zma' ) $gf_id = 'HOM05D000652' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000652' ) $data_identifier = 'HOM05D000652' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 19, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 27, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 16, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 6, 'lal' => (int) 18, 'lonja' => (int) 8, 'lja' => (int) 11, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1